Arrêt de l'ensemble des services de la plateforme Migale à partir du lundi 3 avril 2017

La plateforme Migale sera indisponible du 3 au 10 avril 2017. Cette indisponibilité est dûe à l'arrêt du DataCenter Ile-de-France qui héberge l'infrastructure de la plateforme.

Merci d'avance de votre compréhension.

Pour toutes questions ou informations supplémentaires, merci de contacter help.migale@jouy.inra.fr.

Arbre phylogénétique


VersionMAJ

cytoscape

2.7.02010-05-07DownloadDoc
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration and visualization.

Remarque
Run Unix # cytoscapeRun Web #

VersionMAJ

FigTree

1.4.02013-11-15DownloadDoc
FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures. As with most of my programs, it was written for my own needs so may not be as polished and feature-complete as a commercial program. In particular it is designed to display summarized and annotated trees produced by BEAST.

Remarque
Run Unix # figtreeRun Web #

VersionMAJ

newicktopdf

-2010-08-11DownloadDoc
Convertit un fichier contenant les caractéristiques d'un arbre au format newick en un fichier pdf (programme du groupe Manolo Gouy à Lyon).

Remarque
Run Unix # newicktopdf (produit le même fichier suffixé pdf)Run Web #

VersionMAJ

njplot

20092013-08-27DownloadDoc
NJplot is a tree drawing program able to draw any binary tree expressed in the standard phylogenetic tree format (e.g., the format used by the PHYLIP package). NJplot is especially convenient for rooting the unrooted trees obtained from parsimony, distance or maximum likelihood tree-building methods.

Remarque
Run Unix # njplotRun Web #

VersionMAJ

phylo_win

2.02007-06-28DownloadDoc
Phylo_win (programme du groupe Manolo Gouy à Lyon) Il offre une interface graphique pour la phylogénie.

Remarque
Run Unix # phylo_winRun Web #

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