R'MES: Getting the Sequence Composition

The rmes.composition program allows to give the length and the word composition of a given sequence. The length is defined by the sum of the number of valid characters and of the number of separators.

The basic command is :

rmes.composition [options] -s <filename>

where

-s <filename>
sets the sequence file in FASTA or GenBank format,

and the options are :

-l <int> or --length <int>
(value required) specifies the word length,
-i <int> or --lmin <int>
(value required) specifies the minimal word length,
-a <int> or --lmax <int>
(value required) specifies the maximal word length,
-aa
uses the amino acid alphabet.

If no word length is mentioned then the letter composition will be provided.

For more details, please refer to the user guide

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Article | by Dr. Radut