R'MES: Getting the Sequence Composition

The rmes.composition program allows to give the length and the word composition of a given sequence. The length is defined by the sum of the number of valid characters and of the number of separators.

The basic command is :

rmes.composition [options] -s <filename>


-s <filename>
sets the sequence file in FASTA or GenBank format,

and the options are :

-l <int> or --length <int>
(value required) specifies the word length,
-i <int> or --lmin <int>
(value required) specifies the minimal word length,
-a <int> or --lmax <int>
(value required) specifies the maximal word length,
uses the amino acid alphabet.

If no word length is mentioned then the letter composition will be provided.

For more details, please refer to the user guide

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Article | by Dr. Radut