| Version | MAJ | Dizzy | ||
| 1.11.4 | 2007-09-04 | Download | Doc |
Simulation de systèmes stochastiques.
Remarque An article describing Dizzy has been published, Ramsey S., Orrell D. and Bolouri H. Dizzy: stochastic simulation of large-scAn article describing Dizzy has been published, Ramsey S., Orrell D. and Bolouri H. Dizzy: stochastic simulation of large-scale genetic regulatory networks. J. Bioinf. Comp. Biol. 3(2) 415-436, 2005.ale genetic regulatory networks. J. Bioinf. Comp. Biol. 3(2) 415-436, 2005.
| Run Unix # Dizzy | Run Web # |
| Version | MAJ | JAGS | ||
| 3.4.0 | 2013-12-17 | Download | Doc |
JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind:
To have a cross-platform engine for the BUGS language
To be extensible, allowing users to write their own functions, distributions and samplers.
To be a plaftorm for experimentation with ideas in Bayesian modelling
Remarque
| Run Unix # jags | Run Web # |
| Version | MAJ | Julia | ||
| 0.5.0 | 2017-02-08 | Download | Doc |
Julia is a high-level, high-performance dynamic programming language for
technical computing, with syntax that is familiar to users of other technical
computing environments.
It is a very performant programming language somehow similar to R, Matlab or
Python, but with performances approaching those of C/Fortran.
Remarque
| Run Unix # julia | Run Web # |
| Version | MAJ | mcl | ||
| 12-068 | 2013-08-22 | Download | Doc |
The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for networks (also known as graphs) based on simulation of (stochastic) flow in graphs.
Remarque
| Run Unix # mcl <-|file name> [options], do 'mcl -h' or 'man mcl' for help | Run Web # |
| Version | MAJ | memrec | ||
| 1.11 | 2014-11-12 | Download | Doc |
The memrec (memory usage recorder) script is a tool we've written to watch the memory usage of a program.
Remarque
| Run Unix # memrec [opts] prog | Run Web # |
| Version | MAJ | R | ||
| 3.1.1 | 2014-08-08 | Download | Doc |
R is a language and environment for statistical computing and graphics. In the context of the analysis of genomic data, R includes some statistical packages for clustering, linear model, anova, ...(downloaded from the CRAN). There is also others packages dedicated for the microarray analysis (downloaded from the CRAN). The last the R-project about bioanalysis is named bioconductor (http://www.bioconductor.org/) for the analysis and comprehension of genomic data. The packages anapuce and varmixt developped by the team Statistique et génome (OMIP department INA P-G & INRA - http://www.inapg.fr/ens_rech/mathinfo/recherche/mathematique/outil.html) for differential analysis are also available on the platform.
Remarque Pour avoir l'aide #help.start(browser="mozilla") ou tout autre navigateur non deja utilise (ouvert)
| Run Unix # R | Run Web # |
| Version | MAJ | SAS | ||
| 9.2 | 2010-12-16 | Download | Doc |
SAS - Statistical Analysis System
Remarque
| Run Unix # sasx | Run Web # |
| Version | MAJ | scilab | ||
| 4.1.2 | 2007-11-29 | Download | Doc |
Scilab est un logiciel de calcul numérique scientifique qui fournit un puissant environnement de développement pour les applications scientifiques et l’ingénierie.
Remarque
| Run Unix # scilab | Run Web # |
| Version | MAJ | SvcR | ||
| 1.1 | Download | Doc |
SvcR est une implémentation d'un algorithme de clustering basé sur la recherche d'un séparateur dans un espace de caractéristiques entre des points décrits dans un espace de données. Le format de données est défini par une table attribut/valeur (matrice). Les données sont transformées grace à un noyau dans l'espace des caractèristiques en un cluster unique délimité par un rayon de boule et des vecteurs support. On peut utilisé le rayon de cette boule dans l'espace des données pour reconstruire la frontière formant maintenant plusieurs clusters.
Remarque
| Run Unix # | Run Web # |
