Quick Guide to the Genome Database
THE GENOME ATLAS allows you: To choose and display (zoom in/out) a chromosomal region To click on a Gene to display the Contig Analysis Manager |
THE PAREO METABOLIC PATHWAYS allows you: To compare L. sakei pathways with a Reference Organism To choose a Color code for enzyme comparison To select a metabolic pathway to display within the list To navigate the KEGG-related PAREO database |
THE CONTIG ANALYSIS MANAGER allows you: To navigate (Step by Step) within a defined window size To navigate by Features/Qualifiers and DNA/Protein motifs To display translated frames (best viewed with 200 bp/line) To search for DNA motifs using (Unix) regular expressions To display Annotation Data Forms To access the Protein Analysis Manager data (PAM) Go to Contig Analysis Manager (Public server) |
THE PROTEIN ANALYSIS MANAGER allows you: To browse the protein database by Protein Sources To Search the database for Annotations To link with Swissprot - Interpro - CDD... databases To see the corresponding BLAST alignments (E-values) To navigate KEGG metabolic pathways (PAREO) To get to the Contig Analysis Manager data (CAM) |