This page is obsolete, please go to https://github.com/Bibliome/alvisnlp¶

Getting Started with AlvisNLP/ML¶

• Table of contents
• This page is obsolete, please go to https://github.com/Bibliome/alvisnlp
• Getting Started with AlvisNLP/ML
  • Requirements
  • Requirements included in the repo
  • Compilation
    • Inform requirements
    • [optional] Inform default parameter values
    • Compile
  • Install
  • Run AlvisNLP/ML

Requirements¶

• AlvisNLP/ML Sources:
  • Subversion repository: http://genome.jouy.inra.fr/svn_alvisnlp, or
  • Sources archive
• Java >= 7 + JDK
• ant >= 1.9.6
• Weka = 3.6.1
• Maven >= 3.3.9

Requirements included in the repo¶

These requirements do not need to be downloaded, they are listed here for information.

• tuProlog
• project:alvisir2 Core library
• OBO-Edit library
• Tools Java Utils
• JLine
• json-simple
• lucene
• NekoHTML
• PostgreSQL JDBC driver
• Xerces
• Xalan
• JavaCC
• Jena
• nanoHTTPd
• StanfordNER

Compilation¶

Inform requirements¶

• Make sure your JAVA_HOME environment variable points to the right Java install.
• Make sure your ANT_HOME environment variable points to the right Ant install.
• Make sure your PATH environment variable searches for the right ant.
• Edit the build.properties file and set the weka.jarfile to the path to the weka-3-6.jar file.
• Make sure your PATH environment variable searches for the right mvn.

[optional] Inform default parameter values¶

You can fill in values in the file core/src/main/resources/alvisnlp/app/cli/default-param-values.xml.

These values are default parameter values for the specified modules.

Compile¶

mvn clean install

This will fetch prerequisites and build AlvisNLP/ML.

Install¶

Before installing, the code must be compiled:

./install.sh INSTALL_DIR

INSTALL_DIR is the directory where AlvisNLP/ML will be installed. (!) The install.sh script deletes and re-creates INSTALL_DIR, except if the target directory is the current directory (.).
Several subdirectories are created:

• bin: alvisnlp executable
• doc: documentation (HTML API, HTML modules, PDF guides)
• lib: core and module libraries, dependencies, (!) except for Weka
• share: miscellanous helper files

Run AlvisNLP/ML¶

$INSTALL_DIR/bin/alvisnlp -help

Another option is to put $INSTALL_DIR/bin in the PATH environment variable.

export PATH=$INSTALL_DIR/bin:$PATH
alvisnlp -help