Bibliome

h1. Bibliome Software

h3. [[alvisnlp:|AlvisNLP]]

An automatic pipeline for the semantic annotation of text documents written in Java. It integrates Natural NLP tools (segmentation, NER, term analysis, ML). New components can be easily integrated into the pipeline as a Java class.

h3. [[alvisir2:|AlvisIR]]

A generic semantic search engine based on lucene. AlvisIR2 expands user queries using a lexicalized ontology, and retrieves documents that contain the concepts, synonyms and sub-concepts. AlvisIR2 search engines also handle relational queries.

"Demo instance":http://bibliome.jouy.inra.fr/demo/ontobiotope/alvisir2/webapi/search (PubMed abstracts on microbiology and their habitats).

h3. [[cadixe:|AlvisAE]]

A text annotation editor web application for the collective edition and the visualization entities, relations and groups. AlvisAE has been used to annotate the data for the GRN and BB tasks of "BioNLP-ST 2013":https://sites.google.com/site/bionlpst2013/ challenge.

h3. [[tydi:|TyDI]]

A tool for collaborative validation of automatic term extractors and construction of terminologies and ontologies.

h3. [[alvisjcrawler:AlvisCrawler]]

An automatic corpus construction tool. AlvisCrawler queries WoK or PubMed and fetches automatically full texts from editor sites.

h1. [[Thematic Projects]]