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# Tracker Status Priority Subject Author Assignee Updated Category
8726 Feature Closed Normal Pipeline rev 471 ; organize molecules into living organisms using assembly info Thomas Lacroix Thomas Lacroix 08/25/2017 12:01 PM
8725 Feature Closed Normal adapt to database schema rev 2: additional links and info from ncbi, add columns for convenience when querying the database (avoid cross tables querying) Thomas Lacroix Thomas Lacroix 08/25/2017 12:00 PM
8721 Feature Closed Normal Pipeline rev 471 ; add bdlink info on ncbi assembly id and accession, etc... for the table organisms (trough element accnum) Thomas Lacroix Thomas Lacroix 08/25/2017 11:44 AM
8720 Feature In Progress Normal Pipeline rev 471 ; avoid non essential redondant data, decrease total database size by around 2 fold Thomas Lacroix Thomas Lacroix 08/28/2017 10:33 AM
8718 Feature Closed Normal Pipeline rev 471 ; created script download_genome_files_from_ncbi.pl Thomas Lacroix Thomas Lacroix 08/25/2017 11:33 AM
8706 Feature Closed Normal Taxonomic browser, core / dispensable genome functionality : upon header selection, select all nodes in appropriate categories Thomas Lacroix Thomas Lacroix 08/25/2017 10:55 AM
8704 Feature Closed Normal Taxonomic browser, core / dispensable genome functionality : checkbox to select multiple genomes / nodes. Keyboard support. Thomas Lacroix Thomas Lacroix 08/25/2017 10:36 AM
6924 Feature Closed Normal [Feature] PIPELINE: script integrate_taxo_data.pl : automatic management of the integration of the data for the tables micado.taxo and micado.taxo_names Thomas Lacroix Thomas Lacroix 09/07/2016 02:38 PM
6923 Feature Closed Normal PIPELINE: script count_inserted_data.pl: utility to follow the data that have been inserted in the database Thomas Lacroix Thomas Lacroix 09/07/2016 02:38 PM
6922 Feature Closed Normal PIPELINE: possibility to use Plast instead of Blast (Plast is ~5X faster than Blast) Thomas Lacroix Thomas Lacroix 09/07/2016 02:35 PM
6505 Feature Closed Normal utilities to convert error report into stack trace with symbolMap file Thomas Lacroix Thomas Lacroix 06/03/2016 03:13 PM
6504 Feature Closed Normal show info on PValue in ortholog table Thomas Lacroix Thomas Lacroix 06/03/2016 03:13 PM
6503 Feature Closed Normal gene filter on PValue score if applicable Thomas Lacroix Thomas Lacroix 06/03/2016 03:13 PM
6502 Feature Closed Normal over-representation (P-Value Fisher's Exact test) of orthologs whithin phenotype+ organisms in comparison to phenotype- organisms Thomas Lacroix Thomas Lacroix 06/03/2016 03:11 PM
6142 Feature Closed Normal Better management of info panel: When we click on synteny info, we want to keep this disclosure panel open as we click on other synteny Thomas Lacroix Thomas Lacroix 04/06/2016 02:43 PM
6141 Feature Closed Normal switch to no color for symbols q_gene_insertion or s_gene_insertion in genomic orga view when expanding a q or s insertion region Thomas Lacroix Thomas Lacroix 04/06/2016 02:43 PM
6136 Feature Closed Normal direct link to GO, UniParc, PDB in the gene info panel (if available as annotation) Thomas Lacroix Thomas Lacroix 04/06/2016 02:41 PM
6134 Feature Closed Normal different shade of grey to represent the alignment based on its %identity (>85% identity = black, between 50 to 85% = dark grey, etc.) Thomas Lacroix Thomas Lacroix 04/06/2016 02:40 PM
6133 Feature Closed Normal Added support for url parameters: referenceSpecies, referenceStrain, referenceSubstrain, referenceAccnum, referenceGeneSetNames, referenceGeneSetLocusTag Thomas Lacroix Thomas Lacroix 04/06/2016 02:39 PM
6132 Feature Closed Normal report 5 last history tocken in bug reporting tool Thomas Lacroix Thomas Lacroix 04/06/2016 02:30 PM
5832 Feature Closed Normal PIPELINE: insertion of taxonomic data relevant to the dataset at hand only to save disk space. Thomas Lacroix Thomas Lacroix 02/09/2016 11:16 AM
5831 Feature Closed Normal PIPELINE: support of .gbk files generated by prokka. Thomas Lacroix Thomas Lacroix 02/09/2016 11:15 AM
5830 Feature Closed Normal PIPELINE: blast "organism vs all" instead of "element vs element" to be able to handle draft genomes with many contigs. Thomas Lacroix Thomas Lacroix 02/09/2016 11:15 AM
5829 Feature Closed Normal PIPELINE: script to automatically correct elements types and group them into organisms. Thomas Lacroix Thomas Lacroix 02/09/2016 11:15 AM
5828 Feature Closed Normal PIPELINE: option to recover from failure (computer shutdown, ...) without starting over for resources-consuming steps (blast and find synteny). Thomas Lacroix Thomas Lacroix 02/09/2016 11:14 AM
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