Issues

#	Tracker	Status	Priority	Subject	Author	Assignee	Updated
8731	Bug	Closed	Normal	Pipeline rev 471 ; check_for_element_types_and_reorganize_elements_into_organisms.pl want to update already updated element type from previous run	Thomas Lacroix	Thomas Lacroix	08/25/2017 12:08 PM
8730	Bug	Closed	Normal	Pipeline rev 471 ; ObjectElement.pm -> setaccession -> deal with multiple digit in accnum name, do not file prefix and postfix	Thomas Lacroix	Thomas Lacroix	08/25/2017 12:07 PM
8714	Bug	Closed	Normal	Navigation jumps when moving with >> or << in ortholog table or genomic organisation	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:58 AM
8713	Bug	Closed	Normal	Compared organisms not sorted correctly for scope Whole organism	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:58 AM
8712	Bug	Closed	Normal	Synteny symbol not displaying correct number of pairs, it was missing gene mismatch and insertion	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:57 AM
8711	Bug	Closed	Normal	When transfering q genes from synteny to ortholog table view, s_insertion genes were transeferd as well	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:57 AM
8710	Bug	Closed	Normal	Error when the database was empty. Redirect user to use the guide to add data or check out http://genome.jouy.inra.fr/Insyght/ to test functionalities	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:57 AM
8708	Bug	Closed	Normal	Fixed functionality to send email via smtp inra to report uncaught exception	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:55 AM
8707	Bug	Closed	Normal	Fixed examples taxon ids for release Archaea	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:55 AM
8705	Bug	Closed	Normal	Sometimes 2 references genomes are selected in the taxonomic browser (2 nodes in yellow) ; impossible to change the group for them...	Thomas Lacroix	Thomas Lacroix	08/25/2017 10:37 AM
6506	Bug	Closed	Normal	max connection idle : better configuration of the context.xml config file (max total 97 SQL request in parrallel)	Thomas Lacroix	Thomas Lacroix	06/03/2016 03:14 PM
6501	Bug	Closed	Normal	text above taxonomic browser search tab step 2 was not displaying properly	Thomas Lacroix	Thomas Lacroix	06/03/2016 03:09 PM
6147	Bug	Closed	Normal	color is not displayed correctly at first within the core / dispensable genome browser of the search page, it appears right after clicking on another node	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:45 PM
6146	Bug	Closed	Normal	Uncaught exception: java.lang.IndexOutOfBoundsException when viewing resultq from core/ disp gene set directly in ortholog table	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:45 PM
6145	Bug	Closed	Normal	FATAL: remaining connection slots are reserved for non-replication superuser connections	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:44 PM
6144	Bug	Closed	Normal	the functionality "browse core / dispensable" genome" in the search tab is not longuer functioning correctly	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:44 PM
6143	Bug	Closed	Normal	The presence / absence homology filter did not work correctly with multiple organisms in the box : java.lang.Exception: could not parse orga id as integer : presence	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:43 PM
6140	Bug	Closed	Normal	The compared genomes list in the tab orthologs table and genomic organisation did contains public organisms with no element ; those organisms are now hidden from the result list	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:42 PM
6139	Bug	Closed	Normal	In the search tab, the pre-made examples were not working properly	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:42 PM
6138	Bug	Closed	Normal	some gene have qualifier protein_id with ref to other db (EMBL) enclosed in curly braces, this did pose a problem for the blast2seq link when it was the case ; exemple gene id 41305 metS of Listeria Monocytogenes strain 08-5578 (db origami_test)	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:41 PM
6137	Bug	Closed	Normal	some genes have multiple qualifier protein_id, display them all in the info panel with correct link to external db	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:41 PM
6135	Bug	Closed	Normal	some genes have multiple qualifier protein_id (some ref to other db such as tigr, start with REF), this did pose a problem for the blast2seq link when it was the case ; exemple gene id 5727 EF0944 of E faecalis v583 (db origami_test)	Thomas Lacroix	Thomas Lacroix	04/06/2016 02:40 PM
5819	Bug	Closed	Normal	WEB APP: some special characters were not displaying correctly on some web browser, changed to more widely supported characters	Thomas Lacroix	Thomas Lacroix	02/09/2016 10:30 AM
3788	Bug	Closed	Normal	transfert gene set from genomic orga to ortho table : some genes are missing sometime ?	Thomas Lacroix		01/14/2016 04:06 PM
3756	Bug	Closed	Normal	NullPointer Exception when navigating within a result page while data still loading	Thomas Lacroix	Thomas Lacroix	07/31/2014 03:27 PM