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# Tracker Status Priority Subject Author Assignee Updated Category
8732 Amélioration Closed Normal Pipeline rev 471 ; improve the accessibility of the VM by simplifying the pipeline into 1 master script (keeping error handling proper) Thomas Lacroix Thomas Lacroix 08/25/2017 12:09 PM
8729 Amélioration Closed Normal Pipeline rev 471 ; check_db_consistency.pl : test that element lenght = sequence lenght Thomas Lacroix Thomas Lacroix 08/25/2017 12:07 PM
8728 Amélioration Closed Normal Pipeline rev 471 ; check_db_consistency.pl : test that genes.residues = micado.prot.feat.residues Thomas Lacroix Thomas Lacroix 08/25/2017 12:06 PM
8727 Amélioration Closed Normal Pipeline rev 471 ; script download_from_ncbi.pl : add the option -restrict_to_list_taxon_id_and_subnodes Thomas Lacroix Thomas Lacroix 08/25/2017 12:05 PM
8724 Amélioration Closed Normal Pipeline rev 471 ; Task_add_entry (insert of primary data) : Make the script more resilient to errors and re-run, faster (generator and integrator) Thomas Lacroix Thomas Lacroix 08/25/2017 11:47 AM
8723 Amélioration Closed Normal Pipeline rev 471 ; fill_gene_entry.pl : generate data for table gene directly instead of after schema micado is filled w/ data Thomas Lacroix Thomas Lacroix 08/25/2017 11:46 AM
8722 Amélioration Closed Normal Pipeline rev 471 ; fill_gene_entry.pl : infer correct type directly here instead of subsequent script Thomas Lacroix Thomas Lacroix 08/25/2017 11:45 AM
8719 Amélioration Closed Normal Pipeline rev 471 ; improved analyse_stats_db.pl Thomas Lacroix Thomas Lacroix 08/25/2017 11:34 AM
8717 Amélioration Closed Normal Pipeline rev 471 ; fill_gene_entry.pl : add Locus_tag directly in table genes Thomas Lacroix Thomas Lacroix 08/25/2017 11:30 AM
8716 Amélioration Closed Normal Pipeline rev 471 ; Task_add_entry : cleaner option -GENOME_FILES_FORMAT Thomas Lacroix Thomas Lacroix 08/25/2017 11:25 AM
8715 Amélioration Closed Normal Pipeline rev 471 ; Task_add_entry : added option -SKIP_NEIGHBOR_INFO as this info is not useful Thomas Lacroix Thomas Lacroix 08/25/2017 11:23 AM
8709 Amélioration Closed Normal Modified user interface to deal with database changes in schema: removal of elements.description (-> sequences.definition), elements.date_seq (-> sequences.date_seq), elements.version (-> sequences.version), genes.residue (-> prot_feat.proteine) Thomas Lacroix Thomas Lacroix 08/25/2017 10:56 AM
5833 Amélioration Closed Normal Automatic and anonymous bug reporting tool Thomas Lacroix Thomas Lacroix 02/09/2016 02:19 PM
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