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  • Bibliome

    projet global de l'équipe Bibliome

    • AlvisVisualizations

      Prototype of Visualization Web page for documents semantics

    • AlvisNLP/ML

      Bibliome's AlvisNLP/ML corpus processing pipeline.

    • D-ONT

      Exploitation optimisée des bases de données phénotypiques — Des ontologies pour le partage d’information

    • Papiers

      Papiers de l'équipe

    • Tools

      Miscellanous tools that don't deserve their own project, typically parser and converter scripts.

  • Insyght, a conserved synteny - homolog browser

    Insyght (http://genome.jouy.inra.fr/Insyght/) is a synteny-ortholog browser.

    The goal of the tool is to help biologists and bioinformaticians mine large amount of prokaryotic comparative genomics data and explore the landscape of both conserved and idiosyncratic genomic regions across multiple genomes. Domains of application of these analyses are diverse: identification of evolutionary events, inference of gene functions, detection of niche-specific genes or phylogenetic profiling. Insyght combines three complementary displays: (i) a table for thoroughly browsing amongst homologues, (ii) a comparator of orthologue functional annotations and (iii) a genomic organization view designed to improve the legibility of rearrangements and distinctive loci. The latter display combines symbolic and proportional graphical paradigms. Synchronized navigation across multiple species and interoperability between the views are core features of Insyght. A gene filter mechanism is provided that helps the user to build a biologically relevant gene set according to multiple criteria such as presence/absence of homologues and/or various annotations....

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