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Quick Guide to the Genome Database

Flavobacterium psychrophilum JIP02/86 genome BLAST server

 

    

THE GENOME VIEW allows you:

To choose and display (zoom in/out) a chromosomal region

bullered To click on a Gene to display the Contig Analysis Manager

Go to Genome Atlas with functional classification

THE PAREO METABOLIC PATHWAYS allows you:

bulle To compare Flavobacterium psychrophilum pathways with a Reference Organism

bulle To choose a Color code for enzyme comparison

bulle To select a metabolic pathway to display within the list

bulle To navigate the KEGG-related PAREO database

 

In PAM (Protein Analysis Manager), select the "external tools" menu, then the Metabolism comparison for Flavobacterium psychrophilum to pre-fill the fictive specie form of pareo with all annotated Enzymes of F. psychrophilum. You can then compare this fictive specie with metabolism pathways of all known complete genomes contained in Kegg.

 

 


THE CONTIG ANALYSIS MANAGER allows you:

bulle To navigate (Step by Step) within a defined window size

bulleTo navigate by Features/Qualifiers and DNA/Protein motifs

bulleTo display translated frames (best viewed with 200 bp/line)

bulleTo search for DNA motifs using (Unix) regular expressions

bulleTo display Annotation Data Forms

bulleTo access the Protein Analysis Manager data (PAM)

Go to Contig Analysis Manager (Public server)

View whole genome using Artemis

(Private server for Annotators - MuGeN)

(Private server for Annotators - Artemis)

THE PROTEIN ANALYSIS MANAGER allows you:

bullered To browse the protein database by Protein Sources

bullered To Search the database for Annotations

bullered To link with Swissprot - Interpro - CDD... databases

bullered To see the corresponding BLAST alignments (E-values)

bullered To navigate KEGG metabolic pathways (PAREO)

bullered To get to the Contig Analysis Manager data (CAM)

Go to Protein Analysis Manager (Public server)

(Private server for Annotators)