Quick Guide to the Genome Database
THE GENOME VIEW allows you: To choose and display (zoom in/out) a chromosomal region To click on a Gene to display the Contig Analysis Manager |
THE PAREO METABOLIC PATHWAYS allows you: To compare Flavobacterium psychrophilum pathways with a Reference Organism To choose a Color code for enzyme comparison To select a metabolic pathway to display within the list To navigate the KEGG-related PAREO database
In PAM (Protein Analysis Manager), select the "external tools" menu, then the Metabolism comparison for Flavobacterium psychrophilum to pre-fill the fictive specie form of pareo with all annotated Enzymes of F. psychrophilum. You can then compare this fictive specie with metabolism pathways of all known complete genomes contained in Kegg.
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THE CONTIG ANALYSIS MANAGER allows you: To navigate (Step by Step) within a defined window size To navigate by Features/Qualifiers and DNA/Protein motifs To display translated frames (best viewed with 200 bp/line) To search for DNA motifs using (Unix) regular expressions To display Annotation Data Forms To access the Protein Analysis Manager data (PAM) Go to Contig Analysis Manager (Public server) View whole genome using Artemis |
THE PROTEIN ANALYSIS MANAGER allows you: To browse the protein database by Protein Sources To Search the database for Annotations To link with Swissprot - Interpro - CDD... databases To see the corresponding BLAST alignments (E-values) To navigate KEGG metabolic pathways (PAREO) To get to the Contig Analysis Manager data (CAM) |